PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G21890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 697aa    MW: 73093.8 Da    PI: 6.651
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G21890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-10295351155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  OPUNC02G21890.1 295 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 351
                      57*******************5444.2455535555.7799999*************98 PP

2AP249.78.9e-16394445155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  OPUNC02G21890.1 394 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 445
                      89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-14295361IPR016177DNA-binding domain
PfamPF008473.8E-8295351IPR001471AP2/ERF domain
CDDcd000189.32E-17295361No hitNo description
SMARTSM003805.8E-22296365IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-11296360IPR001471AP2/ERF domain
PROSITE profilePS5103217.108296359IPR001471AP2/ERF domain
PRINTSPR003673.7E-6297308IPR001471AP2/ERF domain
PfamPF008473.1E-10394445IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-18394455IPR016177DNA-binding domain
CDDcd000183.83E-23394455No hitNo description
SMARTSM003808.1E-34395459IPR001471AP2/ERF domain
PROSITE profilePS5103219.467395453IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18395454IPR001471AP2/ERF domain
PRINTSPR003673.7E-6435455IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENPQP HQDSSPPAAI DISGASDFYG LPTSQPTAAD AHLGVAGHHN  60
ASYGIMEAFN RGAQEAQDWN MRGLDYNGGA SELSMLVGSS GGKRAAVEET EPKLEDFLGG  120
NSFVSEQDHA AGGFLFSGVP MASTTNSNSG SNTMELSMIK TWLRNNGQVP GHQPQQQQQP  180
AGAAQQQAQA AHEAAEMSTD ASASSFGCSS DAMGRSNNGA VSAAAGGSSQ SLALSMSTGS  240
HLPIVVAGGG GASGGAAEST SSENKRASGA MDSPGGGAIE AVPRKSIDTF GQRTSIYRGV  300
TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG GYDKEDKAAR AYDLAALKYW GTTTTTNFPI  360
SNYEKELDEM KHMTRQEYIA YLRRNSSGFS RGASKYRGVT RHHQHGRWQA RIGRVAGNKD  420
LYLGTFSTEE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSTLPV GGAARRLKEA  480
ADHAEAGATI WRADMDGGVI SGLADVGMGA YASYHHHGWP TIAFQQPSPL AVHYPYGQAP  540
PSRGWCKPEQ DAAVAAAAHS LQDLQQLHLG SAAAAHNFFQ ASSSSTVYNS GSGGGGATSG  600
YQGLGGNAFL MPASTVVADQ GHSSTATNQG STCSYGNEEQ GKLIGYDAMA MTSAGGDPYS  660
TARSAYHQLS QGSASTVSIA RANGYSANWS SPFNGMG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623974.10.0AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A0E0K2D60.0A0A0E0K2D6_ORYPU; Uncharacterized protein
STRINGOPUNC02G21890.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-121AP2 family protein