PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G18090.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 726aa    MW: 76401.2 Da    PI: 10.0561
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G18090.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08223267244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W+ eEd  l  +v+++G g+W  I ++     +Rt  q++ rw
  OPUNC02G18090.2 223 KPWSREEDVELGAGVQKHGEGNWMEILHKYKfdSTRTHLQLQQRW 267
                      68******************************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-11217274IPR009057Homeodomain-like
PROSITE profilePS5129411.396217275IPR017930Myb domain
SMARTSM007172.9E-6221273IPR001005SANT/Myb domain
PfamPF002491.2E-6223267IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-12224281IPR009057Homeodomain-like
CDDcd116605.06E-17225272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MKKEFPGQAP TSQSHSEMDA AAAAAGGSAA KRKRSFSEDD AYLILHRYQP ATILTMLQEM  60
GKQVGAGKGI DWRALVRKTS TGITSAREYQ MLWRHLAYGH EFVESVEPAA LPLDDGSDLE  120
CEIEIVPAPG NEALAEATSF AKTIITGSSR EQASGQRVNS EAAALNTPNE KIVRVPSDKQ  180
LVPGYRLTNG TGLVSSSKQP SHAGSSPDPL DPNGHPKKKK KPKPWSREED VELGAGVQKH  240
GEGNWMEILH KYKFDSTRTH LQLQQRWALI CKRQGSTKPA NPKIPNATMS EELKAAQKAF  300
SLAIGTTRSS TLRPGGVPHH NPMVTTTTPE VKSVTAPSPL PVPVHVVPVP VPVQPVQVQL  360
PPPQLHQAPA QSAPPPPKVS NASNKSRNNS KKQVAQSIPV NGPLSIQEAA LAAGGRIAEP  420
SVATNFLKAA QSTKAVHIRS RGTVSSKSST GSKTPTVASE PGTQLGSDQH LELQSTGGPS  480
PVLTAHATEQ VHNVSEVAGV NPLGQSAGMH LSETKKTVNT APLSGSSDKM EIDDNSNYFA  540
VTMEDLFPED VKQEDVQDPK IEEAIDPKDA DMLEFDRFVA QGCLNKDNVD KSKAAKIAPE  600
AQGVVGSQKK QLKTLPTVGK SNPIFAGPPA TAKKTKAPVP QGGMSSGMVG AGSVGVLNRS  660
LGGKAPAPAT AGTQSTVQKQ QSMSSKGNLL VPKNVAPGTV TPANNRANTA ANGASKVNPP  720
ASQKPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215221PKKKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0684480.0AK068448.1 Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0PREDICTED: uncharacterized protein LOC4329631
TrEMBLA0A0E0K0Z40.0A0A0E0K0Z4_ORYPU; Uncharacterized protein
STRINGLOC_Os02g34630.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-37MYB_related family protein