PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G16840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 497aa    MW: 55066.6 Da    PI: 4.6007
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G16840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35671592103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++++el+ +isw + gnsfvv+d+++fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+ll+
  OPUNC02G16840.1  67 FLSKTYDLVSEPELDGVISWGAAGNSFVVWDPSTFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSKHLLK 151
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      ki r++s+
  OPUNC02G16840.1 152 KIVRRRSS 159
                      ****9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.08E-3362156IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.4E-3863156IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5563156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-176790IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3167156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-17105117IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340106130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-17118130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDHINHPPTP TTMDAAAALL LEPKLEVGDE PLQMSPPCPF VPLDQLMQPQ PPRPLEALLQ  60
GTQLAPFLSK TYDLVSEPEL DGVISWGAAG NSFVVWDPST FARDVLPHHF KHNNFSSFVR  120
QLNTYGFRKV HADRWEFAHE DFLRHSKHLL KKIVRRRSSP TQQSGLQPGS SGESGLDPEL  180
NTLRREKSAL LQEVTRLKQE HLQTIEHMST LNQRLESAED RQKQMVSFLA KLLQNPTFLR  240
QLKLHRQQKE IDSTRVKRKF LKHVPHGNTD SGESSSQHTG ESNLDFSPTS LDLPATHGDI  300
SDLQNFLLED GDLHLAMLPD NIGLDGVEAP DDIGALVQGF DTQEELELGS GVELLEMPPA  360
SGPHGQDLTI GRSKGKNVLS PGLDAISSEA DCLGSFSDNM GMLSDSMLQT AGKLMDADDD  420
ERIWGVDASS ALQGSCSGSS QQAYGSLASD PYLMEMANKP EKFWELDFQA LDEEDLQLDK  480
CVIDDPSLEQ QRGNMNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-246215915123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019340.0AK101934.1 Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623061.10.0PREDICTED: heat stress transcription factor A-3
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A0E0K0J70.0A0A0E0K0J7_ORYPU; Uncharacterized protein
STRINGLOC_Os02g32590.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.19e-71heat shock transcription factor A3