PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G15530.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 124aa    MW: 14091.9 Da    PI: 9.0383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G15530.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12242451
              AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                     +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  OPUNC02G15530.4  2 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 42
                     9**98..47*********4.....5********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-6244IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-8245IPR016177DNA-binding domain
SMARTSM003801.1E-4257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-7347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MRGVYFKNMK WQAAIKVDKK QIHLGTVGTQ EEAARLYDRA AFMCGREPNF ELSEEEKKEL  60
KKYTWKDFLD KTRDTITSKK QRKVGLIRRN KTDLLIGQSD GDTEMINGGG SSHSEDGDAE  120
TSAS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671561e-174AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296431e-174CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417251e-174CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952530.14e-76ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626905.14e-76ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.14e-76ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP94e-42ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0E0K0233e-86A0A0E0K023_ORYPU; Uncharacterized protein
TrEMBLA0A0E0K0259e-87A0A0E0K025_ORYPU; Uncharacterized protein
STRINGOPUNC02G15530.15e-87(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.24e-38ERF family protein