PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G39400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 709aa    MW: 73063.6 Da    PI: 7.1115
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G39400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-11281337155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OPUNC01G39400.1 281 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 337
                      57*******************4444.2455535555.779999**************98 PP

2AP246.78.1e-15380431155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OPUNC01G39400.1 380 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 431
                      57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-9281337IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15281347IPR016177DNA-binding domain
CDDcd000182.95E-17281347No hitNo description
PROSITE profilePS5103217.385282345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-12282346IPR001471AP2/ERF domain
SMARTSM003809.2E-23282351IPR001471AP2/ERF domain
PRINTSPR003673.8E-6283294IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17380441IPR016177DNA-binding domain
CDDcd000187.99E-23380441No hitNo description
PfamPF008471.0E-9380431IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18381440IPR001471AP2/ERF domain
PROSITE profilePS5103219.045381439IPR001471AP2/ERF domain
SMARTSM003801.5E-33381445IPR001471AP2/ERF domain
PRINTSPR003673.8E-6421441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQDQLPP SQANSTLISA AAATTTGDSS TGDVCFNIPQ DWSMRGSELS  60
ALVAEPKLED FLGGISFSEQ QHHGGKGGAC GVIPSSAAAA AACYASSGSS VGYLYPPSSS  120
SLQFADSVMV ATSSSPVVHD GVTGGMVSAA AAATGNGGIG LSMIKNWLRS QPAPAAPQPA  180
HGAHASAQAL SLSMNMAGHG HAQGGGAGGM ALLAGAGERG RVPAESLSTS AGRKENEQGS  240
DSAGAVVAVG SESCGSGAVV EAGAAAAAAR KSVDTFGQRT SIYRGVTRHR WTGRYEAHLW  300
DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGPTT TTNFPVNNYE KELEEMKHMT  360
RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE  420
AYDIAAIKFR GLNAVTNFDM SRYDVKSILD SAALPVGSAA KRLKDAEAAA VAGYDIGRMA  480
SQLGDGAYAA AAAHYGHHHS AAAWPTIAFQ AAPTTPHHAA AAAAGLYHPY AQPLRGWCKQ  540
EQDHAVIAAA HSLQELHHLN LGAGAGAHDF FSAAAAAAQA MHQQQQHGLG SIDNNASLEH  600
STGSNSVVYN GDGGVAGGGY MMPMSAASGT ATAVVSSHDQ GGLRDHGGDG GKHVQMGYDS  660
YLVGADAYGG AGRMPSWAMT PASAPAATSS SDMTGVCHGA QLFSVWNDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634444.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A0E0JSA30.0A0A0E0JSA3_ORYPU; Uncharacterized protein
STRINGOPUNC01G39400.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-115AINTEGUMENTA-like 5