PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G26150.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 291aa    MW: 33248.4 Da    PI: 10.6995
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G26150.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.2e-16894597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     +++ ++++++ l +p++ ++++++k   ++t++l++ +g + ++k+  r  s++ ++++GWkeF +a gLk g++vvFk +++s+   +v v+
  OPUNC01G26150.2  8 MIKLNTTNQDYLHVPRTITQACQLK--DGQTISLMTAHGLKIRIKI--REISNKLYMRRGWKEFIQATGLKMGESVVFKTSSKSKS--HVIVL 94
                     56778889999***********999..5669***************..*******************************6554444..66665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.167497IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-17799IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-4897IPR003340B3 DNA binding domain
CDDcd100172.78E-9895No hitNo description
PfamPF023628.3E-14891IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-161497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-9207283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-7236287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.711245291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDSPRYSMIK LNTTNQDYLH VPRTITQACQ LKDGQTISLM TAHGLKIRIK IREISNKLYM  60
RRGWKEFIQA TGLKMGESVV FKTSSKSKSH VIVLNKQGLS RCPVPYKSSS SHNKNQSSSV  120
ANLSVNRNTP HHMHYNTTEG KSHKAKSHVK QHIQVNLKHH IASTSTVKMS RTIKDMCYCN  180
KGITLSTELK NYIKDIAQFL HHSSKFYIVA INQTFMKQDR VPLAQRKTVD IQVQIADNPS  240
TSMILQKSTD QRYNLKRGWS DFAIANKIQV GTICIFHFYR ANQLQATVDV I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0JMB40.0A0A0E0JMB4_ORYPU; Uncharacterized protein
STRINGOPUNC01G26150.10.0(Oryza punctata)