PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G20490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 396aa    MW: 43651.6 Da    PI: 5.9208
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G20490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.8e-32871812103
                      HHHHHHHHHCTGGGTTTSEESSSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkeliswseng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      F+ k+ye++ d++++ ++sw  +g  +sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F  g+k+l
  OPUNC01G20490.1  87 FVAKTYEMVADAATDAVVSWGPDGsgSSFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVNPDR---------WEFANEAFLSGQKHL 171
                      9********************554449****************************************999.........*************** PP

                      XXXXXXXXXX CS
     HSF_DNA-bind  94 lekikrkkse 103
                      l++ikr++ +
  OPUNC01G20490.1 172 LKNIKRRRVS 181
                      ******9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.17E-3183178IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-3483178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.0E-5483178IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.4E-2987178IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1787110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-17127139IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340128152IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-17140152IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MLKPQHLAAP RIHMASSSLC RLLIPRPTTR RFSGDPAGAE GMAVAAPVKR EVKPEAEAEA  60
GAGAGWGDDL GVPRPMEGLG EAGPAPFVAK TYEMVADAAT DAVVSWGPDG SGSSFVVWDP  120
HALAAGVLPR FFKHANFSSF VRQLNTYGFR KVNPDRWEFA NEAFLSGQKH LLKNIKRRRV  180
SKPLMDSQLR NKTSVVFGQP EATGEVVSLK RDREALRAEV IMLKQQYNAC KSQLIAMEEM  240
VQNIERRQQQ TISFFAKVLT NPVFVQQVLL NYVNKNGLRG AAKRQRLMEN EEQHADLPLN  300
KGMEAASVME AEVSSGSTGG CGKVGKEETT PKCYAHNIDN MCDDVWEELD ALPETGMEQE  360
DKAGIGSFDV EEFVGRPCGW VDDCPYLVEP MQFVEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-237817817129Heat shock factor protein 1
5d5v_B4e-237817817129Heat shock factor protein 1
5d5v_D4e-237817817129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177LKNIKRR
2175179KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642710.0AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631502.10.0PREDICTED: heat stress transcription factor A-6a
SwissprotQ657C00.0HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLA0A0E0JKB10.0A0A0E0JKB1_ORYPU; Uncharacterized protein
STRINGORGLA01G0166200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.17e-77heat shock transcription factor A2