PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G09340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 401aa    MW: 42546.4 Da    PI: 4.8225
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G09340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.13.5e-3080180296
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk...aksgkepsfskehdqkif 89 
                      lfqrlw++e e+++L+G++df++++g+   +++ d+  fy+ +++++sf+++k+ql+eK+rrLKkK++ + ++   +++g  ++f+++h+  i+
  OPUNC01G09340.1  80 LFQRLWTDEEELLILRGFLDFTTRRGTtfASHQyDTGPFYDEIRRRLSFDFTKNQLIEKLRRLKKKYRLCAARmaaSSQGGGFAFRSAHEAAIY 173
                      79************************99877778**********************************99999777789999************ PP

           DUF573  90 elskkiW 96 
                      +l++ iW
  OPUNC01G09340.1 174 DLARHIW 180
                      ******* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.2E-2881180IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MADDEPTAAA AASHSSPSSS PADEDDEEGT NSDGSNPDHD AAPHHPPPHP PEPTGAIPPP  60
PPPSPPPPPP GAGAEDSRRL FQRLWTDEEE LLILRGFLDF TTRRGTTFAS HQYDTGPFYD  120
EIRRRLSFDF TKNQLIEKLR RLKKKYRLCA ARMAASSQGG GFAFRSAHEA AIYDLARHIW  180
PPALKRDGTA SDEDDINPAA AAATATAAVT TPGAMEDGFS GSATAPASTP TPTPRGRGGR  240
RVRRRMAHEQ ETPALPSTPA LISTDGANQE PLVAAMENSI PLIAQLPPVS ETAQIPVTAN  300
GANEEAVRSI LSPLLKEFIS SFAVAGQTGP GMGLNMGFGG AGLNADIAGL GFGIAGLNPG  360
VPDVDKWRQQ QILELEVYLK RIELVREQVT AALDELRSSE G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644705.21e-156probable transcription factor At3g04930
TrEMBLA0A0E0JGE10.0A0A0E0JGE1_ORYPU; Uncharacterized protein
STRINGOPUNC01G09340.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-24DNA-binding storekeeper protein-related transcriptional regulator