PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G11880.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 490aa    MW: 50339.8 Da    PI: 7.085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G11880.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-063233631155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  ONIVA11G11880.3 323 VRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 363
                      6******************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.414312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-12322380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-13322379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-5322368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-7324367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVHEAALMD  60
ELASRLGGVC GGGLGGGGVP SPPSSSRYAS CYSTPVGSPC KPAPAPPVPS LLAAADAMIA  120
ERAARMSCLA AAGHGGGKLS RAASSQSLLA EPAAAGGVHQ LPASDGSSSD APSRKRKAPG  180
SKARGKDAAT SIAKVLPLLS ASPLQSQRRT SPETMVNFPQ SPEPGTKAKK CKLSADAAGD  240
EDTKPVAGDA GHGGNGKGKV LDAAGEPPKD YIHVRARRGQ ATDSHSLAER VNTAGVYAAI  300
HNFVFSSILA FADAIAAVFH LQVRREKISE RMKLLQDLVP GCNKVTGKAV MLDEIINYVQ  360
SLQRQVEFLS MKLSTVNPQL DFDVDNFIPK DQANDPSMPA PLSLPPPPPP LSYSPEGASP  420
GICYASSQGT AMQSVVTSTK HLETAPTFAN HHVIPVPSLD GFHSAHSQAG SCMWEDDLQS  480
VVQMGFRGNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615632.10.0transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0J1I20.0A0A0E0J1I2_ORYNI; Uncharacterized protein
STRINGONIVA11G11880.30.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-47bHLH family protein