PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G07840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 301aa    MW: 32506.5 Da    PI: 4.8565
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G07840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.4e-1961114356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++ +eq+++Le+ Fe +++++ e+++++A+ l+L  rqV vWFqNrRa++k
  ONIVA10G07840.1  61 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 114
                      4557899**********************************************9 PP

2HD-ZIP_I/II125.81.9e-4060152193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl++eqv++LE+sFe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal+ e ++L++++++L++e+++
  ONIVA10G07840.1  60 EKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIAD 152
                      69**************************************************************************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-1939117IPR009057Homeodomain-like
SuperFamilySSF466892.31E-1853118IPR009057Homeodomain-like
PROSITE profilePS5007116.55256116IPR001356Homeobox domain
SMARTSM003891.6E-1859120IPR001356Homeobox domain
CDDcd000861.20E-1661117No hitNo description
PfamPF000463.7E-1661114IPR001356Homeobox domain
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PfamPF021834.2E-13116156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKRPSCRGSS MAIIHDTSDQ QEDNMRSYMD GGGAAAYEEE EEEVEDDDGG GGGGGGGLGE  60
KKRRLAAEQV RALERSFEAD NKLDPERKAR IARDLRLHPR QVAVWFQNRR ARWKTKQIER  120
DFAALRSRHD ALRLECDALR RDKDALAAEI ADLRDRVDGQ MSVKLEAVAA DEHQPPPPPP  180
PPPLAYNSKV VDGSTDSDSS AVFNEEASPY SGAAIDHHHH QTPASYDTAG FTSFFAPSTT  240
LTSSLSFPSM FHASSHFDGH QELLVGGGGA GAVADADLGG AGFFAGDEHA GGLSWYGAEG  300
W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376740.0CT837674.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613231.11e-173homeobox-leucine zipper protein HOX8
SwissprotQ338Z71e-174HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBLA0A0E0IRI30.0A0A0E0IRI3_ORYNI; Uncharacterized protein
STRINGONIVA10G07840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-33homeobox protein 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]