PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G23260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 326aa    MW: 35587.4 Da    PI: 9.6959
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G23260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.87.9e-3429128297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q ife+
  ONIVA07G23260.1  29 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIFEI 122
                      79************************99877778***************************************8889***************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  ONIVA07G23260.1 123 ARNIWR 128
                      *****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-3030127IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MATPAAAGGG SGSVGGVGSS SGGGERRPLF QRLWTEEDEI VILRGFAEFT AARGTAFASH  60
QYDTDPFYED MRGRLQLGFS KSQLVEKLRR LKRKYRNCVS RLRGSGSAFS FRSPHEQAIF  120
EIARNIWRPT NKHGRDGDSD DEDATQVTPA PVPVNTSPNG EVKSPTSGRQ RRRRRGGDFA  180
ATAPAAAPAT TNMVQPIQPV QVPVSVPVKM DDTLPALSQT TMPITVTMEG SEPLRLPVMP  240
PQPAVLDADK SCLTPLFKEM VRAVINIGSN PFGAQLSEPP HGLPMEGEKW RKQRILELEV  300
YLKRIELLQD QVKATLEELK SSAPGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.10.0probable transcription factor At5g28040
TrEMBLA0A0E0I4K70.0A0A0E0I4K7_ORYNI; Uncharacterized protein
STRINGONIVA07G23260.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-35DNA-binding storekeeper protein-related transcriptional regulator