PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G30800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 345aa    MW: 37762.7 Da    PI: 4.4694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G30800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11155197754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  ONIVA06G30800.1 155 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 197
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.269148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16152216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9155197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15155214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-5161202No hitNo description
CDDcd048735.33E-4273301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAMDGFQ ERHQSTTTVS VLPTFTASYE  60
QPPPAPAAGF DCLSEVYGNA AAAFGPNAGG EYGGGGDMGF LDVVEPKASM VVDGGGLGVC  120
KVEPGLQAEG GFSAAAAAPA SKKKRVEGMP SKNLMAERRR RKRLNDRLSM LRSVVPKISK  180
MDRTSILGDT IDYMKELLER IRQLQEEIEE QQQQETPGVL SVFRELNPNE MLARNTPKVA  240
ASIHCWIYNE EDDGINGVCE VQFDVERKEG GDTRVEIYCA AKPGLLLSTV STLETLGLDI  300
QQCVVSCFND FGMHASCSEM QRERMSADMI KQELFKNAGY GGGCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142162KKRVEGMPSKNLMAERRRRKR
2156163ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635230.0AK063523.1 Oryza sativa Japonica Group cDNA clone:001-116-H12, full insert sequence.
GenBankAP0036850.0AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04.
GenBankAP0072310.0AP007231.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0535F09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643717.10.0transcription factor bHLH93
SwissprotQ9LSL18e-65BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0E0HVP70.0A0A0E0HVP7_ORYNI; Uncharacterized protein
STRINGONIVA06G30800.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-45beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]