PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G22870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 387aa    MW: 40756.4 Da    PI: 9.6834
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G22870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.5e-17200233134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  ONIVA06G22870.1 200 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 233
                      *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-12194234No hitNo description
SMARTSM004012.4E-19194246IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268198230IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14198233IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.03E-14199236No hitNo description
PROSITE patternPS003440200225IPR000679Zinc finger, GATA-type
PfamPF003203.0E-15200233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSTIYMSQLS AALPLMEGEH HQDHHQGHFQ AFSLQPKDPP VLFPFVINRR SSSSSPSDST  60
TLSYGSDHHL TQQQQHQHQA MLEPQHMIGG SSAGIFATPF PTVKSIRDDM IERSQFDPYD  120
TEKLQASCGL AKVVAGGKWS AVPAAKMKIT RKMGEPSSGV TGGAATTVAP KKPRRRLAQA  180
YEDHGHGGAM GQAFGVIRVC SDCNTTKTPL WRSGPCGPKS LCNACGIRQR KARRAMMASG  240
LPASPNAAGP KAAAHSGAAA VAAAQPKVKK EKRADVDRSS LPFKKRCKAV QVEDHQTLPA  300
ATNAAAAAAM EETAESATVA PPPAPTTRGC TLVDSIGLSW SKTHAAATAS CSFRPSPVAP  360
GFAAAVQDEI TDAAMLLMTL SCGLVRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169176PKKPRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698510.0AK069851.1 Oryza sativa Japonica Group cDNA clone:J023034D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641328.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_015641329.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_025882362.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
TrEMBLA0A0E0HST10.0A0A0E0HST1_ORYNI; Uncharacterized protein
TrEMBLB8B3U70.0B8B3U7_ORYSI; Uncharacterized protein
STRINGONIVA06G22870.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-19GATA family protein