PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G28200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 782aa    MW: 86232 Da    PI: 7.2605
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G28200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR28.82.5e-095385641541
              TCR  15 kkYCeCfaagkkCseeCkCedCkNkee 41 
                      k YCeCfa++++Cse+C+C +C+N+++
  ONIVA03G28200.1 538 KSYCECFASEVYCSESCSCRGCFNDHS 564
                      99**********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163412.249530614IPR005172CRC domain
SMARTSM011141.7E-4531565IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.0E-6538562IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MSIKICPGEY DANITREEVV WSRRVLAAKD GTIWARLFMV DREGCWSLSS ILRQWLGSET  60
NKEGARGGGR FEVVATTCEV TIVVGCMKEM SAGQFYCKGE ERVDGGAGVK RRGAPQRKGD  120
SPFLNFVKSL SPISSSQPLD AVPNLQMIKS SDLVHIPSIF TPPEFTHFGL MNTSAKPCQD  180
GLSPYCHMTQ IGRSSCIKQS GPMTIASKNC SIDRSLSQAY HDSPDNASIL PTNLAQRIQL  240
SSDTLGSDKR HGIAGKTDHE TAQKHAKLSC FDQRCLDKMK QLTSGMNVQK RDLAKTHNDE  300
ITACDWDYLG TQYDSSVVPE SDLRFETAEL LLETPKNGDA MPGKSFLPIV EANLENSRRK  360
LFQGSADCYS QSAVDNIHAY CTSRGKEVAT NHVSGILPCP RESQLIPDHH FSDSLEVPSD  420
YMAMNPSAVS QHLRGLHRRS LFNDKVRDPT MGVQSASNLG ASTCATRHRS IPDDNYSKLV  480
GSPVCALPNV DLHLVRMTEE MLAPNTSEMN THNQGDYSSQ ATMPTSAGNS GQENPKRKSY  540
CECFASEVYC SESCSCRGCF NDHSHEETVL STRNRIESRN PLAFAPKVIR TCGPGLEFGE  600
DSNATPASSR HKRGIERFET KEIERADRKM KDHPKEEQSE MDKYHALCEI WGVRSTENLF  660
TTPSMDSRRA FALFPSECPK SSLTSSTRTS SHLHFPTRTD VLLSPFGSYT QMLLGNEASD  720
MLLQQGDSSC TASLRIASPN KKRVSPLRTG NTLSPTCRKE LGLKSIIPPF PSLTGDANSE  780
LQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205050.0AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879709.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0E0GQW60.0A0A0E0GQW6_ORYNI; Uncharacterized protein
STRINGONIVA03G28200.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.19e-26Tesmin/TSO1-like CXC domain-containing protein