PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G03580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 259aa    MW: 26737.6 Da    PI: 6.3023
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G03580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-397106199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp  +r++a+ ++ yeA+ar+rdP+yG+v++i++lqqq+++l+a+
  ONIVA03G03580.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAVTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQ 100
                      7*************************89****************************************************************** PP

           DUF260  94 lallke 99 
                      la+lk+
  ONIVA03G03580.1 101 LASLKA 106
                      *99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3856108IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-387105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLAHLPLAD  60
RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAAAAQ GIHHQDVGAT  120
TKGGYMSAAA TAADDQLGYG GYDQWCGSNG GGAPAASQPG AYSSNGGAGH GHDSITALLA  180
AGSDYMQHSL YHAFEHSEGA GAVDDGHAAA AAFEAAAESS SCGMAASFAA DESVWRSSSS  240
GYQDCEDLQS VAYAYLNRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7363750.0AY736375.1 Oryza sativa (japonica cultivar-group) adventitious rootless1 (ARL1) mRNA, complete cds.
GenBankAB2002340.0AB200234.1 Oryza sativa Japonica Group CRL1 mRNA for LOB domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632119.10.0PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J77e-62LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A0D3FDV00.0A0A0D3FDV0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GGU90.0A0A0E0GGU9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NPQ80.0A0A0E0NPQ8_ORYRU; Uncharacterized protein
TrEMBLB8ANC20.0B8ANC2_ORYSI; Putative uncharacterized protein
TrEMBLI1P7L30.0I1P7L3_ORYGL; Uncharacterized protein
STRINGBGIOSGA011445-PA0.0(Oryza sativa Indica Group)
STRINGORGLA03G0035900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.17e-57LBD family protein