PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G28330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 270aa    MW: 28381.6 Da    PI: 5.3295
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G28330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.1e-06443538
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      C+ +  + ++ fC  ++  lC+ C    H+       H+
  ONIVA02G28330.1  4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43
                     7*****************************7677777776 PP

2zf-B_box23.98.4e-086294335
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                     ++ C+ ++ek+  lfC++++  lC++C +  H 
  ONIVA02G28330.1 62 APLCDICQEKRGFLFCKEDRAILCRECDVPVHT 94
                     689*************************99884 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
CDDcd000211.32E-6347No hitNo description
PfamPF006431.4E-5444IPR000315B-box-type zinc finger
PROSITE profilePS501199.68460107IPR000315B-box-type zinc finger
SMARTSM003364.1E-1160107IPR000315B-box-type zinc finger
PfamPF006432.4E-662102IPR000315B-box-type zinc finger
CDDcd000211.76E-76395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLNP SASGRSPTST  60
TAPLCDICQE KRGFLFCKED RAILCRECDV PVHTASELTM RHSRYLLTGV RLSSEPAASP  120
APLSEEENSS SFCCSADDAV PAPAAPATSH GGSSGSSSIS EYLTTLPGWH VEDFLIDDAT  180
AEAAAAAAAT SSGISANGPP CQGVTRIGGL QESAGYPAWM AQQQLCCDGL VAGDASPASR  240
ERWVPQMYAD QLAAGSKRSR TSTASSYSYW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8323050.0CT832305.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA032L03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623928.11e-165PREDICTED: B-box zinc finger protein 20
SwissprotQ9LQZ72e-52BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A0E0GAF20.0A0A0E0GAF2_ORYNI; Uncharacterized protein
TrEMBLA2X7T10.0A2X7T1_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA008716-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-35DBB family protein