PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G38670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 235aa    MW: 24270.5 Da    PI: 9.9084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G38670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-213283156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  ONIVA01G38670.1 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83
                     68********.**********83...36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-143282IPR001471AP2/ERF domain
CDDcd000182.72E-183290No hitNo description
SMARTSM003802.2E-373396IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-233391IPR016177DNA-binding domain
PROSITE profilePS5103224.3683390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-323390IPR001471AP2/ERF domain
PRINTSPR003673.2E-113445IPR001471AP2/ERF domain
PRINTSPR003673.2E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAPRAATVEK VAVAPPTGLG LGVGGGVGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQSMVGCG GSPSSNSTVD TGGGGVQTPM  120
RAMPLPPTLD LDLFHRAAAV TAVAGTGVRF PFRGYPVARP ATHPYFFYEQ AAAAAAAEAG  180
YRMMKLAPPV TVAAVAQSDS DSSSVVDLAP SPPAVTANKA AAFDLDLNRP PPVEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-222995168ATERF1
3gcc_A1e-222995168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0032990.0AP003299.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0699H05.
GenBankAB0371830.0AB037183.1 Oryza sativa osERF3 mRNA for ethylene responsive element binding factor3, complete cds.
GenBankAB0368830.0AB036883.1 Oryza sativa mRNA for osERF3, complete cds.
GenBankAK0613800.0AK061380.1 Oryza sativa Japonica Group cDNA clone:006-304-H01, full insert sequence.
GenBankKM2628350.0KM262835.1 Oryza sativa Indica Group cultivar Nagina 22 Aptella 2-like transcription factor (AP37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622082.11e-167PREDICTED: ethylene-responsive transcription factor 8
TrEMBLA0A0E0FUE61e-167A0A0E0FUE6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N3L81e-167A0A0E0N3L8_ORYRU; Uncharacterized protein
TrEMBLA2WVZ61e-167A2WVZ6_ORYSI; Aptella 2-like transcription factor
TrEMBLQ7F4G51e-167Q7F4G5_ORYSJ; Ethylene responsive element binding factor3
TrEMBLQ9LRF31e-167Q9LRF3_ORYSA; Ethylene responsive element binding factor3
STRINGBGIOSGA004611-PA1e-167(Oryza sativa Indica Group)
STRINGLOC_Os01g58420.11e-167(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.19e-22ethylene responsive element binding factor 4