PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G25660.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 174aa    MW: 19873.8 Da    PI: 8.3002
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G25660.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR22.52.4e-077899223
              TCR  2 ekkgCnCkkskClkkYCeCfaa 23
                     + kgC C ks C k+YCeC + 
  ONIVA01G25660.2 78 QVKGCACCKSGCRKLYCECLQV 99
                     689****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036384.0E-48098IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MQLVGSAKAC TWTEKLYKQA IFRVHQASKT TCWEETWGLH LRLILFNGSV WAKRNRHLCR  60
CNKSSYCLQW MVASVRNQVK GCACCKSGCR KLYCECLQVT DTDIQRFDDN GDSSGTSGYS  120
SGTIMGQYKF DDGLEIRRHN HIIDMAALIL KVLILNEEQQ NELLTTKHAQ VCDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0665615e-56AK066561.1 Oryza sativa Japonica Group cDNA clone:J013073D14, full insert sequence.
GenBankAP0028665e-56AP002866.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0410E01.
GenBankAP0033145e-56AP003314.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046B10.
GenBankAP0149575e-56AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126095e-56CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8297485e-56CT829748.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA046P21, full insert sequence.
GenBankCT8297495e-56CT829749.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN039I21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FPH11e-126A0A0E0FPH1_ORYNI; Uncharacterized protein