PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G22790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 130aa    MW: 13899.8 Da    PI: 6.9166
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G22790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.61.1e-34111131100
           DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +CaaC++++r +C+++C+lapyfpa++p++f++++ lFG++ +l+ l+a+ +++  r+++m+s+v+ ++ara dPv+Ga+gvi++lqq+l+++k
  ONIVA01G22790.1  11 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLFGVDGILRRLEAAGPDTvtRRATMASIVFVSDARAADPVHGAYGVIRNLQQELASVK 104
                      7*********9***************************************555446************************************** PP

           DUF260  92 aelallkee 100
                      ae+a+++++
  ONIVA01G22790.1 105 AEIAAIRQK 113
                      ****99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.06810114IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-2811111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MADPPPPHHP PCAACAHQGR PSCPAGCPLA PYFPADRPER FEYANLLFGV DGILRRLEAA  60
GPDTVTRRAT MASIVFVSDA RAADPVHGAY GVIRNLQQEL ASVKAEIAAI RQKQQQAQQP  120
PPALEDGPTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640499.15e-60PREDICTED: LOB domain-containing protein 22
TrEMBLA0A0E0FND82e-90A0A0E0FND8_ORYNI; Uncharacterized protein
TrEMBLA2WRN62e-90A2WRN6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA003810-PA6e-90(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153751118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-18LOB domain-containing protein 22