PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G19420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 509aa    MW: 55531.4 Da    PI: 8.3155
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G19420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.73.1e-13257347397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      f r w+ +Dei++L +l+d   + g  p++     f+e v++    ++++s++ eK+r+LK+++++ v         +++k+hd +  els  i
  ONIVA01G19420.1 257 FGRKWNGNDEIMILEALVDQIRSGGNVPQEpGHPLFHELVQRLEGRTFNHSDVREKVRSLKRRYNDVVLS-----GLAITKDHDLQLHELSCEI 345
                      6799****************999999998845556777777777789********************999.....789**************** PP

           DUF573  96 Wg 97 
                      Wg
  ONIVA01G19420.1 346 WG 347
                      *8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-12257347IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MRRRSPPPAA AQPPRPPTRA AESGEEGGDP GKDEVAAPPK GDSALPRSGS GFGSGNAAAP  60
DGPAKSPMKP KKRVTAPPSS DHGSRENLAA GSPSNEVPAP QGDDAAQEDD LPESPPKSKK  120
NRKKKKKALR AGDSGKVAAP DDPAEPTRPQ QDVGEVDGRL AESEQEVPPN AGKAKKKASA  180
QARKKPSAKQ HAAAQEEEDG DLMAEAEEEV APRQGDEEDG KGPLPQRKSK RVAALSGSIC  240
PPDPKRAKIV DAQKPGFGRK WNGNDEIMIL EALVDQIRSG GNVPQEPGHP LFHELVQRLE  300
GRTFNHSDVR EKVRSLKRRY NDVVLSGLAI TKDHDLQLHE LSCEIWGRSV AHAGDDKQRC  360
LARDEQSSLA RDEQKSFAGD EEKSLARDEQ SSLARDEQKS FARDEKSLAR DEEKSLASDE  420
QRSFDDMCKQ FPLLAKEIKV LMEGQPAIME LFPRLDSDQV VAIEKKLENL RWIDMKRKKK  480
MAVKMAKIRK GLIYKLEGAV ILADGNMIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126KKNRKKKKK
2172184KAKKKASAQARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029700.0AP002970.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504D03.
GenBankAP0032130.0AP003213.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644071.10.0basic salivary proline-rich protein 2
TrEMBLA0A0E0FM690.0A0A0E0FM69_ORYNI; Uncharacterized protein
STRINGONIVA01G19420.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17455910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-07DNA-binding storekeeper protein-related transcriptional regulator