PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G11590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 249aa    MW: 26077.3 Da    PI: 9.8748
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G11590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.24.9e-32111111100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka  +e  r++a+++l++eA++r rdP +G+++ ++ l+++ + l+ae
  ONIVA01G11590.1  11 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAALRAE 104
                      7**********************************************9977766**************************************** PP

           DUF260  94 lallkee 100
                       a+l+++
  ONIVA01G11590.1 105 NAALRRQ 111
                      9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.42110112IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-2811108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTGGGSGGAG ACAVCKHQRR KCEPNCELAA YFPANRMNDF RALHLVFGVA NLTKLIKANA  60
TEAARRRAAE TLTWEARWRE RDPSEGCYRE VSCLRRDNAA LRAENAALRR QADQCACCAG  120
AAGVRHASSP TTLQHQLLLV SAYNGATAAR PGNVVPHNAT VVPGGFVAAA GGVRGANGNG  180
AMSSVRPPPH HVQAPATQTV TGFVAHAQDD RYRAVSVCPP AANAAAVPRS GAAVRGQGDY  240
RDKISDAAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0032010.0AP003201.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1066G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644107.11e-180PREDICTED: LOB domain-containing protein 6
TrEMBLA0A0D9Y5X70.0A0A0D9Y5X7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FJB70.0A0A0E0FJB7_ORYNI; Uncharacterized protein
TrEMBLB8A9M40.0B8A9M4_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA003124-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-13LOB domain-containing protein 2