PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G13360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 228aa    MW: 25010.5 Da    PI: 12.284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G13360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.83e-142778155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     + ++GVr++   grWv     ++  +g +  r ++g+f+taee a+a++aa+++l g
  OMERI12G13360.1 27 PVFRGVRRRGCAGRWV-----FRGaRGaRGDRLWVGTFDTAEETARAHDAAMLALCG 78
                     579*************.....999999888***********************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-92778IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-202888IPR001471AP2/ERF domain
SMARTSM003802.5E-132892IPR001471AP2/ERF domain
PROSITE profilePS5103216.1472886IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-132888IPR016177DNA-binding domain
PRINTSPR003679.8E-52940IPR001471AP2/ERF domain
CDDcd000184.25E-222988No hitNo description
PRINTSPR003679.8E-55268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTSSATATPA SPKRSAGRTK FHEMRHPVFR GVRRRGCAGR WVFRGARGAR GDRLWVGTFD  60
TAEETARAHD AAMLALCGAS ASLNFTDSAW LLHILRAPVV SGLRPPAARR AARRQQGRRR  120
VLAPGEYRHC HCHLRRCCID RSSVGTHEFN DRFNPRIIKI SSLSATIHDN TPPFQQARTP  180
LPSSSMSPLM TRSAPLTSSH ASSSSMLATS VRPLNRLATS SHLSPPSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:15656983}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234821e-137AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAF2433841e-137AF243384.1 Oryza sativa CRT/DRE binding factor (CBF) mRNA, complete cds.
GenBankAP0025361e-137AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149621e-137AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY3452351e-137AY345235.1 Oryza sativa transcription factor RCBF4 mRNA, complete cds.
GenBankAY5020521e-137AY502052.1 Oryza sativa (indica cultivar-group) CRT/DRE binding protein gene, complete cds.
GenBankAY6076911e-137AY607691.1 Oryza sativa (japonica cultivar-group) cold-induced CBF/DREB transcription factor mRNA, complete cds.
GenBankAY7858951e-137AY785895.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1D (DREB1D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6J1A51e-59DRE1D_ORYSJ; Dehydration-responsive element-binding protein 1D
SwissprotQ6REU51e-59DRE1D_ORYSI; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0E0FE521e-162A0A0E0FE52_9ORYZ; Uncharacterized protein
STRINGOS06T0165600-014e-58(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-26dehydration response element B1A
Publications ? help Back to Top
  1. Zhang Y, et al.
    Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis.
    BMB Rep, 2009. 42(8): p. 486-92
    [PMID:19712584]