PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 229aa    MW: 24980.2 Da    PI: 6.3636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-1556106255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G++++k +grW AeIrd    +  k  r ++g+f+taeeAa a++a +++l+g
  OMERI12G12810.1  56 RFHGIHRRK-SGRWSAEIRD----NmiKGSRSWVGTFDTAEEAAWAYDAVARRLYG 106
                      689***999.7*********....77455************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.29656114IPR001471AP2/ERF domain
PfamPF008471.1E-956106IPR001471AP2/ERF domain
SMARTSM003804.3E-2656120IPR001471AP2/ERF domain
CDDcd000186.30E-2056113No hitNo description
Gene3DG3DSA:3.30.730.107.9E-2556114IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2056115IPR016177DNA-binding domain
PRINTSPR003671.7E-55768IPR001471AP2/ERF domain
PRINTSPR003671.7E-58096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRGPCEEKLK TVVVVLSDDD DDYEEEFRRY CENTTLPAKG DKGGRRRPAA SKKQHRFHGI  60
HRRKSGRWSA EIRDNMIKGS RSWVGTFDTA EEAAWAYDAV ARRLYGPNAR TNFPLPPPPP  120
VAPLLPAPAV ANKKMNSKRK KPAVAAEMVG GPAGGEPAAG EMAPVLLGNA LEATNGWEFE  180
PYSCMGLVVG GAVYNYADEP EPADDELQLL HLHGGAMVDF AADGCLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1241114272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5104790.0AB510479.1 Oryza sativa Indica Group Snorkel 2 gene for Ethylene response factor, complete cds, cultivar: C9285.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664718.21e-35PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLA0A0E0FDX11e-168A0A0E0FDX1_9ORYZ; Uncharacterized protein
STRINGOMERI12G12760.11e-169(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156151014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-10ERF family protein