PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G12030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 304aa    MW: 33031.5 Da    PI: 4.7031
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G12030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-112322721055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OMERI12G12030.1 232 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 272
                      9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14224288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13227285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-13231276No hitNo description
PfamPF000102.1E-8232272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEAGGLITDM SWIVFDLPSH GDESEMMAQL FSAFPIHGEE EGHEQLPWFD QSSNPCYYSC  60
NASSTAYSNS NASSIPAPSE YEGYCFSDSN EALGVSSSIA PHDLSMVQVQ GATEFLNVIP  120
NHSLDSFGNG EPSCEYLDSA SGTNKRKHLA EGEFDGQTRG SKCARKAEPK RAKKAKQTVE  180
KDASVAIPNG SCSISDNDSS SSQEVADAGA TSKGKSRAGR GAATDPQSLY ARKRRERINE  240
RLKTLQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DEMWMYAPIA YNGMNIGLDL  300
NIDT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL9548520.0AL954852.5 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619496.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A0E0FDK60.0A0A0E0FDK6_9ORYZ; Uncharacterized protein
STRINGORGLA12G0149000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-52bHLH family protein