PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI12G11070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 417aa    MW: 44363.2 Da    PI: 6.1093
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI12G11070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.12.1e-20111352128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        GfrF+P+ e++v++yL   v+g++  ++e +i+++d+y + eP+dL  k    +++++ + +fF+  ++ +    + +r++  g+W ++ + 
  OMERI12G11070.1  11 ELGFRFNPSPEQVVTYYLPCLVAGQQpKDTEGCIHSADVYGAnEPRDLAgKyapVARSSNGDRFFFTGCKRMKG---KFSRSAGGGTWVSQSS- 100
                      57**********************994445556*******8769****843554334455588****9999764...7999999*****8866. PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k++++++g ++g  k + f     ++g++tdW+m+ey+l
  OMERI12G11070.1 101 KDLKNREGIKIGEVKNFRFK----KDGKNTDWLMEEYHL 135
                      888888*************7....78899********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-219154IPR003441NAC domain
PROSITE profilePS5100523.62910154IPR003441NAC domain
PfamPF023651.0E-1313135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEKGKLDFLL ELGFRFNPSP EQVVTYYLPC LVAGQQPKDT EGCIHSADVY GANEPRDLAG  60
KYAPVARSSN GDRFFFTGCK RMKGKFSRSA GGGTWVSQSS KDLKNREGIK IGEVKNFRFK  120
KDGKNTDWLM EEYHLCGQES GDVVEPVVCR IYVSPRAAPD SVAHQESAVL QPQEPAPLPV  180
PAAPAPPRQV PVVTQQAPPP PPPLVPVITQ DAPPLKRPAP VAAPPCAKKM RGDVSAFPVV  240
RQSCVAAPRC APRVVAPPPR HPPIQTYPTD PFESAPLDPF EPPPAAASVT GGHHTPQPSV  300
PVPATPEQGL SLAASNSPEL DPANIGIDMD ELMRYLGNTP LDGVLPSQLF VLPTNDDEDV  360
ELAKVLEDGL QGGGGRQWQS TAVCDSSSSA TGILARHGAT AASSTHPDLS QGSVRAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL7318830.0AL731883.4 Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7317850.0AL731785.2 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619211.10.0PREDICTED: uncharacterized protein LOC107275392
TrEMBLA0A0E0FD550.0A0A0E0FD55_9ORYZ; Uncharacterized protein
STRINGLOC_Os12g22940.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-12NAC domain containing protein 52