PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI11G03460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 887aa    MW: 96293.6 Da    PI: 6.0124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI11G03460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000726927291355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  OMERI11G03460.1 692 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 729
                      67799************66......999999********99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-175113IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.493679728IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-4692741IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MAVGEALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG  60
CAAAAAADTM TICSLVNKVM ASQVHVVGEG TVGRAAFTGN HQWIIHGTAN DHGIPSEVAA  120
EMSYQFRLGI QIISKPIFHA IVNSECAVAN LWQLSVISSS EKQIKNSSSQ QGRSRPLHGA  180
SNVQSTENRS KLFSQFPMTC EQYNHPDTMA VSGSTSLNAC MNGSLLKIAQ LNGQAVREHI  240
VYSKPDVRFI QQVYRDGQLG SNAQSIAMSS DLISSSLRSV QKQPLLMNNI SQLEYGDGAD  300
TSADLQKNVL LKPPVCLDPF IHDRNINISH GIAEVSNIIN DHGNFDFLSG GARVVRANLC  360
TSATSQVLDR RSHSVSGMLL HRQPIVSCEV PQSSEFSTKM GSLERGSFQI SSAPSSESDV  420
QISNGLNTSI SQENQLSVSN HICQDQKING VNDLSATLST ERMNNMDGCK PPGLSLEKTS  480
PLFMEQSVEN DLFDILGPQF HHLCHNAGAD LVLWTDAKPE SSDRDVPESS IHADSAPLFS  540
SRDNELYSGI FSLTDTDQLL DAVISNVNPA GKQSSDDSAS CKTSLTDIPA TSYLCSKEMK  600
QCGSSGVPSV LIKNESAQFI KQPCLAENAE DGCLSQNNGI HKSQIRLWIE SGQSMKCESA  660
SASNSKGLDT PSKANRKRSR PGESPKPRPK DRQLIQDRIK ELREMVPNGA KCSIDALLEK  720
TVKHMLFLQS VTKHADKLKD STESKILGSE NGPVWKDYFE GGATWAFDVG SQSMTCPIIV  780
EDLDRPRQML VEMICEDRGI FLEIADFIKG LGLTILRGAM EARKSKIWAR FTVEANRDVT  840
RMEIFLSLVR LLGPNCDSSG AVENANNVNM PLGLAHQPVI PATGRIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616921.10.0PREDICTED: transcription factor LHW
TrEMBLA0A0E0F2S10.0A0A0E0F2S1_9ORYZ; Uncharacterized protein
STRINGLOC_Os11g06010.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.14e-54conserved peptide upstream open reading frame 7