PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G12830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 191aa    MW: 20320.9 Da    PI: 6.8039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G12830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-183483155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr++   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g
  OMERI10G12830.1 34 PVYRGVRFR--AGKWVSEIRElR-----KpSRIWLGTYATPEMAAAAYDAAALALRG 83
                     68*****96..5*********66.....68*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-123483IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-183592IPR016177DNA-binding domain
PROSITE profilePS5103218.8613591IPR001471AP2/ERF domain
SMARTSM003806.2E-243597IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-253592IPR001471AP2/ERF domain
PRINTSPR003671.1E-63647IPR001471AP2/ERF domain
CDDcd000181.19E-133693No hitNo description
PRINTSPR003671.1E-67393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEQRAAAAAQ QRQGRRQSAA ACGIRRARAE TRHPVYRGVR FRAGKWVSEI RELRKPSRIW  60
LGTYATPEMA AAAYDAAALA LRGRGAALNF PDAARSRPAP ASASADDVRA AATAAAAAMA  120
HQEEDDDSRR QLEDGGGGVV DEDDVLEMPR LMVSMAEGLM ISPPPVMLGL QADGGGIMDE  180
GGGVVRLWDH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1233911272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788940.0AC078894.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613984.18e-80ethylene-responsive transcription factor ERF027
TrEMBLA0A0E0F0481e-131A0A0E0F048_9ORYZ; Uncharacterized protein
STRINGOMERI10G12810.11e-131(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-15ERF family protein