PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI10G06470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 970aa    MW: 103713 Da    PI: 4.9055
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI10G06470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.51.2e-234616291127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk.................................kvkaeekew.y 59 
                      +p+Gf F P+d el    ++k v+g+   + ++v+++++i++++P  L+                                   +++ e+ + y
  OMERI10G06470.1 461 MPVGFYFVPKDLELFAILMCKLVRGEVPGAlNNVFEQIRILEFHPALLRGrpaspppiaaattedlkpcsssssspamacaetYIENMENGCmY 554
                      699**************999999999965514569*************845889*****************99999998876644445554459 PP

              NAM  60 fFskrd..kkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      fFs+r+  +k+++++r+ r+++ g+Wka+g +k+v sk  +g +vg k t+vfy    + +++++kt+W mhey+
  OMERI10G06470.1 555 FFSRRQfaTKATNKRRPMRVANGGTWKASGGSKTVRSKkvGGIDVGQKLTMVFYerrFEGDQNPVKTNWAMHEYT 629
                      999997224455899999******************99888899**********44313466779*********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.83E-6365418IPR001810F-box domain
SuperFamilySSF1019412.09E-6454511IPR003441NAC domain
PROSITE profilePS5100528.941461650IPR003441NAC domain
PfamPF023651.1E-13462629IPR003441NAC domain
SuperFamilySSF1019414.58E-22548653IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MALKNSGLID FCLNAAAAAS STDEPSTSSA LPPPTPPRPL PDMAGPSSAT PLLPLQLPDM  60
ARHSSATPLL PLSLPGLAGG MMSMADQANM TSTSQASTLS SELLQDWYDE FEITYGAVMP  120
PSPSTISEAA PQSSPTGWWP SSNGGPMQHD DYLGMADPAS YTCPPRAAIP PEPMAPLKSS  180
PAPPPAVEHH RLSPPHDAAG NNYNYGGGTQ AQHEHQHRLH PQEPQALVVD GEDGYDAMPG  240
DDDEQLGGAE FDTERIAEMV NHIMDGEFED NTVLKYNEVF PDDDEVVAAP MMIDGGGDGD  300
GADGGPSGPR VWPLKRRNER KKEKGKGKLY PHALVPFAGG ERRLFTRRRA STTAFAMEPG  360
AASRAYLPDD LVADILTRLP ARSVCRFRAP SWRALATERQ SVLAHRPRRP RPRRRGPHES  420
PPPQERPSAD GDGSDGSNNN NGKWKGKKKV VSEYGKNRHG MPVGFYFVPK DLELFAILMC  480
KLVRGEVPGA LNNVFEQIRI LEFHPALLRG RPASPPPIAA ATTEDLKPCS SSSSSPAMAC  540
AETYIENMEN GCMYFFSRRQ FATKATNKRR PMRVANGGTW KASGGSKTVR SKKVGGIDVG  600
QKLTMVFYER RFEGDQNPVK TNWAMHEYTK IIPGSKNQLE DLAVYRLYKI RRKEDTEPVN  660
AAAAASSTDK PSTPAALPPP TPPPRPLPDM AGSSSATSLL PLQLPGLAGS SSTRPLALPL  720
QLPGLPGSSS AMSLPSLAGE MTSMADQANM ASTSQASTPS SELPQDWYDE YEVAYGAAAP  780
PSPSTISWAA LPSSPTAWWP SSNGGPVQHD GYLGMADPAS YTLEHLLPTA AIPPEPMAPP  840
KNSPAAPPPA VDHHQQLLPP QDAGGNYDHP ELADYGGGAQ AQHEHHHHPQ ELTDGADGDE  900
QLELGAAEFD SERVAEMVSR IMDGEFVFKF EDDTIVSFNE VAAAPMLIEG GGDGDGDGAD  960
GGVGDDPFDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0PREDICTED: NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0EXI60.0A0A0E0EXI6_9ORYZ; Uncharacterized protein
STRINGBGIOSGA001729-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-11NAC domain containing protein 3