PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G12160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 381aa    MW: 40726.5 Da    PI: 6.6549
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G12160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.15.8e-11184242563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l+ l+   + l++e+
  OMERI09G12160.1 184 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSLLQRDTSGLTTEN 242
                      9***********************************************99988888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-16180244IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.944182245IPR004827Basic-leucine zipper domain
PfamPF001701.1E-9184242IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-10184239No hitNo description
SuperFamilySSF579597.03E-11184235No hitNo description
CDDcd147033.63E-23185234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MNREKSPIPG DGGDGLPPQS ARRAGPPAAA AAAAAEYDIS RMPDFPTRNP GHRRAHSEIL  60
SLPEDLDLCA GGGGDGPSLS DENDEELFSM FLDVEKLNSS CGASSEVEAE SSSAGAAAAA  120
AAAAAAAHGA RPKHQHSLSM DESMSIKAEE FVGASPGTEG MSSAEAKKAV SAAKLAELAL  180
VDPKRAKRIW ANRQSAARSK ERKMRYIAEL ERKVQTLQTE ATTLSAQLSL LQRDTSGLTT  240
ENSELKLRLQ TMEQQVHLQD ALNDTLKSEV QRLKVATGQM ANGGGMMMNF GGMPHQFGGN  300
QQMFQNNQAM QSMLAAHQLQ QLQLHPQAQQ QQVLHPQHQQ QQPLHPLQAQ QLQQAARDLK  360
MKSPMGGQSQ WGDGKSGSSG N
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027950.0AK102795.1 Oryza sativa Japonica Group cDNA clone:J033108B13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612692.10.0transcription factor RF2a
SwissprotQ69IL40.0RF2A_ORYSJ; Transcription factor RF2a
TrEMBLA0A0E0ETU90.0A0A0E0ETU9_9ORYZ; Uncharacterized protein
STRINGOMERI09G12160.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42693868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.17e-80bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]
  5. Ordiz MI,Yang J,Barbazuk WB,Beachy RN
    Functional analysis of the activation domain of RF2a, a rice transcription factor.
    Plant Biotechnol. J., 2010. 8(7): p. 835-44
    [PMID:20408988]