PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G11810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 236aa    MW: 25314.3 Da    PI: 9.8571
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G11810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.63e-3781381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdke 91 
                      lppGfrFhPtdeelvv+yL++++ +++l++  vi++v d   ++PwdLp    a++ e yfFs r+ ++a+  g  ++r + sgyWkatg +k+
  OMERI09G11810.1   8 LPPGFRFHPTDEELVVQYLRRRALSRPLPA-AVIPDVhDAAVLDPWDLP---GAGDGEAYFFSFRQLAAASggGGWRRRRAGSGYWKATGAEKP 97 
                      79****************************.8999999***********...457889*******999986324456666799*********** PP

              NAM  92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+ +      +++lvg+k+tL f +++ p+  +t+Wvmheyrl
  OMERI09G11810.1  98 VFLRgfgcggGQHLVGVKTTLLFLRAKPPS--RTRWVMHEYRL 138
                      ****9999988888**********666666..*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-444170IPR003441NAC domain
PROSITE profilePS5100545.1998170IPR003441NAC domain
PfamPF023652.9E-239138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MATPGQQLPP GFRFHPTDEE LVVQYLRRRA LSRPLPAAVI PDVHDAAVLD PWDLPGAGDG  60
EAYFFSFRQL AAASGGGGWR RRRAGSGYWK ATGAEKPVFL RGFGCGGGQH LVGVKTTLLF  120
LRAKPPSRTR WVMHEYRLAA AGAVAGQKKS GNHSCVAQPG EWVVCRIFLK NNGSSRRRAG  180
DADGETPVTG VHGHRRRQPS PSPSSSSCVT DEISDEEEEV SSGSINGAPS ASQREA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-31717214170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605090.0AK060509.1 Oryza sativa Japonica Group cDNA clone:001-019-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651404.11e-124PREDICTED: NAC domain-containing protein 83
SwissprotO227986e-48NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A0E0ETN71e-173A0A0E0ETN7_9ORYZ; Uncharacterized protein
STRINGORGLA09G0123200.11e-125(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-35NAC domain containing protein 41