PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G10230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 223aa    MW: 23826.8 Da    PI: 8.6212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G10230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-132167354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  OMERI09G10230.1 21 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 67
                     58*************************9.....7***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9291867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-122168No hitNo description
PfamPF000103.4E-112167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-142168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-112473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.4E-4121188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVTDGECSAA AARKGGSPAV RSHSEAERKR RQRINAHLAT LRTLVPSASR MDKAALLGEV  60
VRHVRELRCR ADDATEGADV VVPGEGDEVG VEDDDEGERD EGCYIVGGGD RRRRRRVRAW  120
VCCADRPGLM SDLGRAVRSV SARPVRAEVA TVGGRTRSVL ELDVVVASDA AADNDRAVAL  180
SALRAALRTV LLNREELLAA AAAAAATDGY KRPRFSPRCS SLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERKRRQ
2110117RRRRRRVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0039170.0AP003917.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1666_A04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649548.11e-112PREDICTED: transcription factor AIG1
TrEMBLA0A0E0ESZ91e-152A0A0E0ESZ9_9ORYZ; Uncharacterized protein
STRINGORGLA08G0157100.11e-115(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-14bHLH family protein