PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G08020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 112aa    MW: 11803 Da    PI: 7.7081
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G08020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.24.8e-291987160
      ZF-HD_dimer  1 kekvrYkeClkNhAaslGghavDGCgEfmpsegeegt.........aaalkCaACgCHRnFHRreveee 60
                     +++vrY eC++NhAas+GghavDGC+Ef+++e+  g          aaalkCaACgCHR+FHRr +++e
  OMERI09G08020.1 19 CCGVRYGECRRNHAASTGGHAVDGCREFIAAEDGGGGgnnntgavaAAALKCAACGCHRSFHRRVQVYE 87
                     5789***************************8777435699999999*****************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-27190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.5E-262284IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-192382IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.6932483IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MMKRLVVLRR REPAVRFSCC GVRYGECRRN HAASTGGHAV DGCREFIAAE DGGGGGNNNT  60
GAVAAAALKC AACGCHRSFH RRVQVYEVAW DDDCASDDTS SSSPSSSSSS SE
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588401e-150AK058840.1 Oryza sativa Japonica Group cDNA clone:001-004-D10, full insert sequence.
GenBankAP0056361e-150AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149651e-150AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611485.15e-50mini zinc finger protein 2
SwissprotQ6ER224e-51MIF3_ORYSJ; Mini zinc finger protein 2
TrEMBLA0A0E0ES689e-75A0A0E0ES68_9ORYZ; Uncharacterized protein
STRINGOMERI09G07870.11e-75(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.15e-10mini zinc finger 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]