PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G07260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 322aa    MW: 33180.6 Da    PI: 7.626
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G07260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.7e-32115168255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  OMERI09G07260.1 115 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 168
                      9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-15112169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29113169IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-24115168IPR006447Myb domain, plants
PfamPF002495.1E-7116167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGFYSSYHHP STWPSTSPSP LAAPPGAASS PLDPTAAFLS SPHHRMLSAA SGRLNGMLSV  60
SDTLRSYGVP GTAAPGVIGG AHHHHHHLHG GQPFVGALAS RFMPKLPAKR SMRAPRMRWT  120
STLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK STDKPAASSG  180
PADGGSGDEE FAGGGQAASG GGDSMCLRGG GGGGAAAAAF AEHGRSASEG AASSVGGGGG  240
GDMDQSSAGN TSTTRWSNSS RDPWLSSNSC NMDAHRSVGL SSPIENLEPC RSSSSQVSNH  300
ELSSPSLEFT LGRPDWHGAD HD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16116170357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16116170357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16116170357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16116170357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2687480.0FJ268748.1 Oryza sativa Japonica Group rolled leaf 9 (RL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610960.10.0probable transcription factor RL9
SwissprotQ0J2350.0ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A0E0ERX60.0A0A0E0ERX6_9ORYZ; Uncharacterized protein
STRINGOMERI09G07070.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.15e-44G2-like family protein