PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G03700.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 235aa    MW: 25912.7 Da    PI: 8.8046
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G03700.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.67.5e-303383151
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                     kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQ
  OMERI09G03700.4 33 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQ 83
                     79************************************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-273083IPR009057Homeodomain-like
SuperFamilySSF466891.22E-133386IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-213384IPR006447Myb domain, plants
PfamPF002495.5E-73583IPR001005SANT/Myb domain
PfamPF143795.4E-22113158IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MFPPGLIHHR PDGGEAGRAA GGGPSLVLTA DPKPRLRWTA DLHERFVDAV AQLGGPEKAT  60
PKTILRTMGV KGLTLFHLKS HLQYSYLSLI FLDQKYRLGK QSGKEASEQS KDEVKEALRA  120
QMEMQRRLHE QVEVQKHVQI RMEAYQKYID TLLEKACKIV SEQLASSGFS ISDNDLPELS  180
GGVMCGSADT LSSSIFHQLS VSPINLHSPE GKPTPSGIEG QMILQKSPEL KRKSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-173383252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-173383252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-173383151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-173383151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-173383151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-173383151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-173383252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-173383252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-173383252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-173383252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-173383252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-173383252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693360.0AK069336.1 Oryza sativa Japonica Group cDNA clone:J023010K22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611986.11e-145protein PHR1-LIKE 2
SwissprotQ94A571e-59PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A0E0EQI71e-172A0A0E0EQI7_9ORYZ; Uncharacterized protein
STRINGOGLUM09G05270.11e-145(Oryza glumipatula)
STRINGOMERI09G03370.11e-145(Oryza meridionalis)
STRINGORUFI09G05100.11e-145(Oryza rufipogon)
STRINGONIVA09G04720.11e-145(Oryza nivara)
STRINGOBART09G04520.11e-145(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.19e-62G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]