PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI09G03020.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 221aa    MW: 25113.6 Da    PI: 9.8551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI09G03020.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-17114161354
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      y+G+r+++ +grW++eIrdp+    +  r++lg+f+tae+Aa+a++   ++++
  OMERI09G03020.2 114 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 161
                      9*******.**********75....44*******************8777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.484113170IPR001471AP2/ERF domain
SMARTSM003809.5E-38113176IPR001471AP2/ERF domain
CDDcd000182.32E-25114169No hitNo description
PRINTSPR003673.3E-11114125IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-20114172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-30114171IPR001471AP2/ERF domain
PfamPF008472.5E-9114154IPR001471AP2/ERF domain
PRINTSPR003673.3E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRRRVSSSSS SPARHHKARR SKRKLAVDED WEAAFREFLS RDDDDDDDHD HDGQFDGHHH  60
HVVLAPLVRS NNCVHGHEVV ASTVGGGASR RRRADDDDGE RRRRRRREKR SYPYRGIRQR  120
PWGRWASEIR DPVKGIRVWL GTFDTAEGAA RAYDDEVRRI YGGNAKTNFP LSPPPSPPPP  180
PAEQPAAERS PSTTPPTTTE DSGDSRILIE RSLCNLDMRL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-18114171361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-18114171664ATERF1
3gcc_A1e-18114171664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190106RRRADDDDGERRRRRRR
299107ERRRRRRRE
3100106RRRRRRR
4100107RRRRRRRE
5101109RRRRRREKR
6103108RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4294450.0EU429445.1 Oryza nivara strain IRRI-IRGC-101524 submergence-1C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651344.16e-69ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0EQB21e-157A0A0E0EQB2_9ORYZ; Uncharacterized protein
STRINGOMERI09G02790.11e-149(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-25ERF family protein