PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G18670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 215aa    MW: 23239.2 Da    PI: 6.2817
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G18670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.2e-3871071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +k+l +lp ++r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+ +l+a+
  OMERI08G18670.1   7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHKVFGASNASKILMHLPVSDRCEAAVTMSYEAQARLRDPIYGCVAHIFSLQQQVVSLQAQ 100
                      7*************************89****************************************************************** PP

           DUF260  94 lallkee 100
                      l++lk++
  OMERI08G18670.1 101 LESLKAQ 107
                      **99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6956108IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTGLGSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KILMHLPVSD  60
RCEAAVTMSY EAQARLRDPI YGCVAHIFSL QQQVVSLQAQ LESLKAQATQ GYGDGCSISS  120
PQNDSCGNML TSILQDEQQF VGPTMASNSS VKNENHSYIA NGHLAPMSAQ SSQGFEAELC  180
MADYSNTNPC CSVQGNWYHD MEDLQSVAFA YLNQA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648252.11e-160PREDICTED: LOB domain-containing protein 29
SwissprotQ9SLB62e-64LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A0E0EP501e-161A0A0E0EP50_9ORYZ; Uncharacterized protein
STRINGBGIOSGA026473-PA1e-160(Oryza sativa Indica Group)
STRINGLOC_Os08g44940.11e-160(Oryza sativa Japonica Group)
STRINGORGLA08G0192400.11e-160(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-54lateral organ boundaries-domain 29