PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G17270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 264aa    MW: 27628.4 Da    PI: 7.9045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G17270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-1396140554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h e+Er+RR+++N +f eLr  +P+       +++Ka+ L  Av YI +L
  OMERI08G17270.1  96 HVEAERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAVAYIAEL 140
                      889**********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.40291140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1696155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1696151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1096140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-1296145No hitNo description
SMARTSM003531.2E-1197146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDELVLSPSS SSATACFPTL DFEFCEVPDQ WLLGLGHDEL DKDAAASALA AAAASQSASN  60
DDVPRNPPAT TTTTTKRRGQ KPGPCSGGGG APPIGHVEAE RQRREKLNRR FCELRAAVPT  120
VSRMDKASLL ADAVAYIAEL RRRVERLEAA ARRAPLAPSA AAAAWAAGLG AGAIGRDDLV  180
VRMVGRDAAI LRLTTTAAAA RHAPARMMCA VRALNLAVQH ASVTRVGGAA TVQDVMVDDV  240
PAALQDEARL RAALLHTLQL AETT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0039140.0AP003914.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1521_G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649359.11e-133PREDICTED: transcription factor bHLH14-like
TrEMBLA0A0E0ENK80.0A0A0E0ENK8_9ORYZ; Uncharacterized protein
STRINGLOC_Os08g43070.11e-132(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-16bHLH family protein