PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G05500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 192aa    MW: 20558.2 Da    PI: 10.0669
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G05500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.77e-3282137258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      ep+YVNa+Qy++Il+RRq+Rak+e+e+k  +k rkpylheSRh hAl+R+RgsgGrF
  OMERI08G05500.1  82 EPIYVNARQYHGILRRRQSRAKAESENKA-NKIRKPYLHESRHLHALKRARGSGGRF 137
                      8****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.0E-3379140IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.96580140IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.4E-2782137IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.4E-2483105IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.4E-24114137IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKPDGETQLH PTAAGHPDPG LGTSSAEYVA PVGPATAPVA YPYIGTYYGG IYGAYSGQPL  60
VNAALMAMPP HSVPLVTDAV VEPIYVNARQ YHGILRRRQS RAKAESENKA NKIRKPYLHE  120
SRHLHALKRA RGSGGRFLNS KAVEGKQDTK SVDKKDGAVP SEKRDNKLAN SIIKLENSSP  180
TTQPGAHAAD VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-2080141162NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880270.0AB288027.1 Oryza sativa Japonica Group OsHAP2A mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0599030.0AK059903.1 Oryza sativa Japonica Group cDNA clone:006-208-G09, full insert sequence.
GenBankHQ7314790.0HQ731479.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648196.11e-130nuclear transcription factor Y subunit A-4 isoform X1
SwissprotQ84JP15e-37NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0E0EIX11e-137A0A0E0EIX1_9ORYZ; Uncharacterized protein
STRINGOMERI08G05480.11e-138(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165581313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.13e-36nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]