PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G04810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 467aa    MW: 47559.3 Da    PI: 7.4494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G04810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000563623892254
                      HHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  22 eLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       L++l+ +      +K + a++L +++eYIk L
  OMERI08G04810.1 362 ALQQLVSPF-----GKTDTASVLHETIEYIKFL 389
                      566666665.....89***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.255340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-10352409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-7352409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-4352393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MADHQEMIHA AAAPAMYGGG GGGAAGGATT TTGSHGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGGG VADPAAIAVH  120
AQTVAGGGWN QQPFLDGSGF HGYMSSSRND HHTNHHHHHH IKTPSLMSHS SSNNSVMLQD  180
HHHDQNYQFL SNLGFELLSS PTSPYGGSGG GGGFRSSLLR SLTEPPAAAV AKPNNSPGFQ  240
QYHNHQHQPA MNLQPPAAAG REPLQFTNST AAPFWNPSSG FTVAADGAAL GGAGASPAQT  300
TPASLAAKRA LEGVGDSSSI ITKKAKADST PLKKSRTGTP SPLPTTFKAC VRKEKLGDRV  360
TALQQLVSPF GKTDTASVLH ETIEYIKFLH DQVGALSAPY LKNRQQVLHL KNSAGVDNDG  420
GGGGEATAAS KRDLTGRGLC LVPISSTFAV ASETPVDFWT PFGAAFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0E0EIN40.0A0A0E0EIN4_9ORYZ; Uncharacterized protein
STRINGONIVA08G04680.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.39e-42bHLH family protein