PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G03640.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 143aa    MW: 14806.3 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G03640.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.23.2e-142751125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP+GA+sV+Ca+C tV
  OMERI08G03640.4 27 CSGCRNLLMYPAGATSVCCAVCSTV 51
                     ***********************99 PP

2zf-LSD146.84.7e-156690125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggC+tlL+Y rGA+sV+C++C+tV
  OMERI08G03640.4 66 CGGCHTLLMYIRGATSVQCSCCHTV 90
                     ************************9 PP

3zf-LSD141.91.6e-13104128125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C++V
  OMERI08G03640.4 104 CGNCRMLLMYQYGARSVKCAVCNFV 128
                      ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.0E-132454IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-112751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.5E-156392IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.9E-12101131IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPFTPPNG AQSQLVCSGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGNCRML LMYQYGARSV  120
KCAVCNFVTS VGASPGTDQK PSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117590.0AK111759.1 Oryza sativa Japonica Group cDNA clone:J023055E16, full insert sequence.
GenBankAJ6206760.0AJ620676.1 Oryza sativa Japonica Group mRNA for zinc finger protein, clone Z52.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648106.11e-100PREDICTED: protein LSD1 isoform X1
RefseqXP_015648107.11e-100PREDICTED: protein LSD1 isoform X1
SwissprotQ0J7V91e-102LSD1_ORYSJ; Protein LSD1
TrEMBLA0A0D3GWK01e-100A0A0D3GWK0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QEL71e-100A0A0E0QEL7_ORYRU; Uncharacterized protein
TrEMBLA0A0E0AR351e-100A0A0E0AR35_9ORYZ; Uncharacterized protein
STRINGLOC_Os08g06280.13e-99(Oryza sativa Japonica Group)
STRINGORGLA08G0030200.13e-99(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-60lsd one like 1