PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G02010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 147aa    MW: 15858.3 Da    PI: 9.02
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G02010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD127.74.4e-094769123
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                     C+gC tlL Y rGA+++RC++C+
  OMERI08G02010.1 47 CSGCPTLLFYNRGASNIRCPSCN 69
                     **********************8 PP

2zf-LSD132.51.4e-1085109125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Crt+L+ P+GA+ V+Ca C  V
  OMERI08G02010.1  85 CGQCRTTLMHPPGASTVQCATCRYV 109
                      **********************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.1E-6434IPR005735Zinc finger, LSD1-type
PfamPF069437.8E-5730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-104572IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-94769IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.7E-1182112IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-1185109IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MQDQLICSGC RRVVQYRRGV TGVCCPGCNT LTAVNPSAAA GMSELICSGC PTLLFYNRGA  60
SNIRCPSCNR LNSTRSANQI AHLTCGQCRT TLMHPPGAST VQCATCRYVN HVRDARPQTV  120
LVENPKTLDD KGKLVSNVVV GVTSWKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8307650.0CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence.
GenBankAK1204540.0AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648991.11e-102PREDICTED: protein LOL4
SwissprotQ84UR01e-104LOL4_ORYSJ; Protein LOL4
TrEMBLA0A0E0EHH01e-105A0A0E0EHH0_9ORYZ; Uncharacterized protein
STRINGBGIOSGA027709-PA1e-102(Oryza sativa Indica Group)
STRINGLOC_Os08g03610.11e-102(Oryza sativa Japonica Group)
STRINGORGLA08G0013100.11e-102(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-39LSD family protein