PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G00600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 339aa    MW: 37703 Da    PI: 6.4491
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G00600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.4e-52141481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 
                      +ppGfrFhPt+eelv +yL++kv+++k++l ++i+e+d+y++ePwdL++       +    e++ewyfFs +d+ky++g+r+nrat++g+Wkat
  OMERI08G00600.1  14 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQELDLYRIEPWDLQErckyG--GhggdEQTEWYFFSYKDRKYPSGTRTNRATAAGFWKAT 104
                      69****************************.99**************9535441..14443666****************************** PP

              NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      g+dk+vls+  + +++g++ktLvfykgrap+g+ktdW++heyrl
  OMERI08G00600.1 105 GRDKPVLSSspSPRVIGMRKTLVFYKGRAPNGRKTDWIIHEYRL 148
                      ********8777788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-579180IPR003441NAC domain
PROSITE profilePS5100557.1914180IPR003441NAC domain
PfamPF023651.6E-2615148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDRHEEEAGE CPCVPPGFRF HPTEEELVGY YLARKVASQK IDLDIIQELD LYRIEPWDLQ  60
ERCKYGGHGG DEQTEWYFFS YKDRKYPSGT RTNRATAAGF WKATGRDKPV LSSSPSPRVI  120
GMRKTLVFYK GRAPNGRKTD WIIHEYRLQS NEHAPTQACI NCNHLFHSEE GWVVCRAFQK  180
PMPNQQQHRL SYGCIPGSYG GGAYTAVPDN YSLLLHHDNP SFAAAAAAAR PLMGAASAAL  240
FANNNNSVVD HSNILSSESK LHFSDMMPPL ESPTVDGEGY VSQASSCVDV DQQAGIVDWN  300
LLTSLLPPPA HQLFHHLPSA SSSKNSNNIS SSGFIDDRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-5331804168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340720.0JN634072.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 3 mRNA, complete cds.
GenBankAK1106110.0AK110611.1 Oryza sativa Japonica Group cDNA clone:002-168-H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650248.10.0PREDICTED: NAC domain-containing protein 105
SwissprotQ9C8W97e-86NAC30_ARATH; NAC domain-containing protein 30
TrEMBLA0A0E0EGT30.0A0A0E0EGT3_9ORYZ; Uncharacterized protein
STRINGLOC_Os08g01330.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.16e-85vascular related NAC-domain protein 7