PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G00270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 248aa    MW: 26735.2 Da    PI: 7.6336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G00270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1886136255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp     k +r++lg+++ta eAa+a++ a+ +l+g
  OMERI08G00270.1  86 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDCAAFQLRG 136
                      7********.**********8...4445*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.41E-2786145No hitNo description
SuperFamilySSF541715.3E-2386145IPR016177DNA-binding domain
PfamPF008472.8E-1386136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-3286145IPR001471AP2/ERF domain
SMARTSM003804.1E-3786150IPR001471AP2/ERF domain
PROSITE profilePS5103224.51386144IPR001471AP2/ERF domain
PRINTSPR003671.2E-108798IPR001471AP2/ERF domain
PRINTSPR003671.2E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAAFGLDQHL DLIRAHLLDD AHHHVLAPSP SPSPPGTGRV RPAPVSLPPR PPLLWAAAAR  60
QQQECFELGG GYAGEGEGEE EDDFRRYRGV RQRPWGKYAA EIRDPARKGA RVWLGTYDTA  120
VEAARAYDCA AFQLRGSKAI LNFPNEVAAD AAVKWAPPVA PIPAAAASAS AMTAGRGKRV  180
RSEEQYYLRE VKKERLIMAP PENSSSSSSS AAAAAGDIWD ELKGICSLPP LSPLSPHPHM  240
AFPQLFNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2687147666ATERF1
3gcc_A2e-2687147666ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798900.0AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence.
GenBankAC0847630.0AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY3418260.0AY341826.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614870.11e-116ethylene-responsive transcription factor 5
SwissprotQ404784e-38ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A0E0EGN41e-178A0A0E0EGN4_9ORYZ; Uncharacterized protein
STRINGOMERI08G00260.11e-178(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-31ERF family protein