PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G23330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 349aa    MW: 38813 Da    PI: 7.0353
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G23330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1085e-3452106155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprl+Wt+eLHerFveav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl
  OMERI07G23330.1  52 KPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 106
                      79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.69449109IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-3250107IPR009057Homeodomain-like
SuperFamilySSF466891.08E-1751107IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2452107IPR006447Myb domain, plants
PfamPF002495.7E-1054105IPR001005SANT/Myb domain
PfamPF143793.5E-25155201IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTRTEQMMYH QQQVQSDSQH LSSRPGLPPE KQFLLQGGAD SSSGLVLSTD AKPRLKWTSE  60
LHERFVEAVN QLGGPDKATP KTIMRLMGIP GLTLYHLKSH LQKYRLSKNL QSQANASRAQ  120
GVLGCSTTEI DKPCEGNGSP ASHLDLETQT SSSSMHINEA FQMQIEVQRR LHEQLEVQRH  180
LQLRIEAQGK YLQSVLEKAQ EALGTIAVAE TAATANASSS KRHQNEHTQL HHHQQQQQVG  240
DGSVDSCLTA CDCEGSHHSH SHGHRGEQDI LSIGLPPFEP AAARSGKDDM EHHYLLFPNE  300
PSRRRSCSDE RRREMSTLQA SELDLSINGR SSSHSHRREN IDLNGAGWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-1952108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1952108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1952108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1952108157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0676450.0AK067645.1 Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646569.10.0myb-related protein 1 isoform X1
SwissprotQ9FK477e-77PHLA_ARATH; Myb-related protein 1
TrEMBLA0A0E0EGB50.0A0A0E0EGB5_9ORYZ; Uncharacterized protein
STRINGOMERI07G23810.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.37e-76G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]