PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G17270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 221aa    MW: 22549.5 Da    PI: 7.933
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G17270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.61.9e-282102196
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA  r+ +Pv Gavg+++ ++++l+q
  OMERI07G17270.1   2 SCNGCRVLRKGCSEGCVLRPCLqgidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSGGSWHLCQ 95 
                      6*********************9999888899************************************************************** PP

           DUF260  90 lkaelal 96 
                      ++++++l
  OMERI07G17270.1  96 AAVDTVL 102
                      *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.1831107IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-252100IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQGIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR  60
AAVFQSLLYE AAGRTINPVG GAVGLLSGGS WHLCQAAVDT VLRGGGIQPL PDQVDAAAGG  120
RDVFASTARR AVGGCSTFST AKRSTTKNPG TPHDAAAVAP QPEPSCDLGL WLSPGSPPAP  180
GDRRSGGRRA DTPSMNSEGS VTTCGVVGGG EREPELLNLF V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698130.0AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647207.11e-147PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN111e-67LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A0E0EDU31e-159A0A0E0EDU3_9ORYZ; Uncharacterized protein
STRINGORGLA07G0157700.11e-147(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.15e-59LOB domain-containing protein 37