PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G01290.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 436aa    MW: 46813.6 Da    PI: 6.4282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G01290.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.45.3e-18262308455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  OMERI07G01290.2 262 VHNLSERRRRDRINEKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 308
                      6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.37E-16254312No hitNo description
SuperFamilySSF474593.14E-21256320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.768258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-21262316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-15262308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-17264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MLRTHISPCF LATLTSSPRA RGARRTSVTC RLSKNCGAMD AGATARSSSS AMMMMNQKKP  60
LLSDGELVEL LWQDGGVVAH AQTRHRSPGL LARSGVTGEE ETASAWFADG GGGDDALGVG  120
MGRDIYSQFW HSFANVDGHA AGALALATPT PTPRAAARKD DVSSRLDEAG LSICGSNAVA  180
APALPADDDD DDIDAAAPRE EEEEGTGAAR AGGASSSGGS GSGSYPLFKR GRDELDSLSE  240
VADETRPSKR PAAKRRTRAA EVHNLSERRR RDRINEKLRA LQELVPHCNK TDKASILDEA  300
IEYLKSLQMQ IQIMWMTTGI APMMFPGAHQ LMPPMGMGLN TACMPGAQAQ GLNQMQRTTY  360
YMNNSLPNQM PQIPSPVMSA PNVPNDMQSD NRIRGPRNPF LHCNDTLTAT AQVPVTNMQA  420
TRGDEQRKAE QLVLEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253270KRRTRAAEVHNLSERRRR
2266271ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4002760.0JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648043.10.0PREDICTED: transcription factor PIF4 isoform X1
RefseqXP_015648044.10.0PREDICTED: transcription factor PIF4 isoform X1
RefseqXP_015648045.10.0PREDICTED: transcription factor PIF4 isoform X1
TrEMBLA0A0E0E7920.0A0A0E0E792_9ORYZ; Uncharacterized protein
STRINGORGLA07G0023700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-28phytochrome interacting factor 3