PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G23830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 362aa    MW: 39334.5 Da    PI: 8.6534
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G23830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.12e-3351105155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  OMERI06G23830.1  51 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 105
                      79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-3248106IPR009057Homeodomain-like
PROSITE profilePS5129411.87648108IPR017930Myb domain
SuperFamilySSF466891.97E-1650107IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-2451106IPR006447Myb domain, plants
PfamPF002492.2E-753103IPR001005SANT/Myb domain
PfamPF143792.7E-24143189IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MFPSSPSPSS SKKQQQLSGG VGGAAAAASS NDRPPLCVQG DSGLVLTTDP KPRLRWTVEL  60
HDRFVDAVTQ LGGPDKATPK TIMRVMGVKG LTLYHLKSHL QKFRLGKQHK DFNDHSVKDA  120
MDMQRNAASS SGIMGRSMND RSVHVNEALR MKMEVQRRFH EQLEVQKHLQ MRVEAQGKYM  180
QTILEKAYQA ISSPGDCATW HAGYKSLGNQ AVLDIGSSMS FPSLQDDLQL YGGSHLDHLH  240
QQHEQMEIRP SIDTFLAFNY SSSTGKSPMV WPGADDGGGE PAKISGDHQL QMAAPATTTT  300
TMMMEAITMS GGDSMGSKGF EGQMSSKLDM RSPPPQQTVL PVGSERMSSP IVGAKATNIS  360
YG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1851107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1851107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1851107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1851107157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195880.0AK119588.1 Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642102.10.0myb family transcription factor APL isoform X1
SwissprotQ9SAK58e-84APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0E0E4X10.0A0A0E0E4X1_9ORYZ; Uncharacterized protein
STRINGORUFI06G25680.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-82G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]