PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G21940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 980aa    MW: 96130 Da    PI: 5.2729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G21940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.8e-10123174156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      ++y+GVr +    r+vAeI+ p+       r +lg+f+tae+ a a++aa++ l+ge
  OMERI06G21940.1 123 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 174
                      69********.8*********95....258************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-4123174IPR001471AP2/ERF domain
CDDcd000183.34E-18123180No hitNo description
PROSITE profilePS5103217.701124181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-21124181IPR001471AP2/ERF domain
SMARTSM003807.0E-18124187IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-14124181IPR016177DNA-binding domain
PRINTSPR012171.9E-9279291No hitNo description
PRINTSPR012171.9E-9299315No hitNo description
PRINTSPR012171.9E-9368385No hitNo description
PRINTSPR012171.9E-9423448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAG GGGGGFLLSP GERERLRAGS  60
GLELVIVPVV EGDQVVSSSA SASEEVLVSP LVEGEVRVVP AVERRRWRRQ AAAEEWEEID  120
PETKYRGVRV RFGTRYVAEI HNPTGAGRLW LGTFDTAEQG AWAYDAAARV LRGEAAATNF  180
GDPAPAPSPL SAEMRSMLAF FDGARARRER VVEERGAAAA AAEASEAPAP LLLLPAPSPS  240
SDVSPVTVQV AAPPSSSDAA PVPATTLSDA SPVIVQVPVP PSSDATPVPA PTSSDASPVP  300
VQVPAPPSSD VAPVPVPVQV PAPTSSGSDE AAFVGGRGHG RGAGAGVGGG RGLGRGGGGG  360
RGRGGKRAPT TAVTVVAPPP PVPTPAAGAA APTLAPASAA AHAPAPSVEP DALVSPASSA  420
IAPAYAAPAP APAPPALEAL ARPPPAAPAS LSASGGERGC IAIANAAVAG RGRGRGSGAK  480
RAPTAVTMGA PPPPARTPAA APAKALVSAP APAPSAVISP VLAASASASA AFAPAPAANE  540
AIPQPLPLPA AASAAAAPAA ERKRKLPTAS ILSASGDRGR VADAAVAGGS RGRGRGCGLT  600
PAVVTVGAPP PPSAAPAPVP ASAPSLEPNA IIPPVSSTLA PGASVAAAAA PALAPPAAAP  660
IAIPTPPPTV AAAAAAPKPK KRKVLTASTL TGSGGPGRGR GRVAEETFAG RGRGVWSGRG  720
CGRGRGRIPT AVTVGTPSPS APTPASASAT APLIQSNAVI SSVPPTLAAS SAAASPPVPV  780
ITELTTAAAA PLPEKPVLTA HDVVMATLFP NDVFSYTAGP SHAPPPPPPV ASGSFFQEVI  840
PPGGVPTNYA IHEAPDFDPN VFFADVPDGE QDESVLLSST STLLDVDSSL SLAADDAASS  900
AQAAVDVASS SAQAAIDVPS SSVLAVVDVP SSSAQAAIDV PSSSAQVATD VASSLTQGAA  960
GNERPIVFDF DLNEPAFNYE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053860.0AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0E4230.0A0A0E0E423_9ORYZ; Uncharacterized protein
STRINGOMERI06G20370.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1378799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.17e-12ERF domain protein 12