PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G18870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 474aa    MW: 51105.3 Da    PI: 7.7864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G18870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.45.2e-31552301128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                      lp+G++F+Ptd+el+ e+L++kv+          ++++   i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+        
  OMERI06G18870.1  55 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqppaaan 146
                      799************.99*****988856665543333333766646**********.556667799******************88******* PP

              NAM  78 ................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                                       ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OMERI06G18870.1 147 tsggggggnasssssasaaavarhgqqqqqqqRSETRWHKTGKTRAVVG-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 230
                      ***************************9998755789***********9.99************5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3549139IPR003441NAC domain
PROSITE profilePS5100526.58255249IPR003441NAC domain
PfamPF023658.4E-1556230IPR003441NAC domain
SuperFamilySSF1019412.09E-35184249IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDGVVAEEAG GGGGGGGHRL LIGSRIEEHR KYMSEESCCP RCGHKIDRKL DWVGLPAGVK  60
FDPTDQELIE HLEAKVRPGG EAAAHPLIDE FIPTIEGEDG ICYTHPEKLP GVSKDGLSRH  120
FFHRPSKAYT TGTRKRRKIQ PPAAANTSGG GGGGNASSSS SASAAAVARH GQQQQQQQRS  180
ETRWHKTGKT RAVVGGGRQR GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GEAEEERDGE  240
LVVSKIFYQT QPRQCAAADA AAAASVVDRR TTSGRDRAAA AAAAAAAAAA PMASANVNVA  300
AFHGGAAGID EFSFAQFRSS FEEAGMGASS SDHQSAMVDQ RRQQQQHDDD EHDHRRGGGG  360
HHYVGQQQSV AATFHVVSSP ADPLARLMSP PPAHQGTVML RQPEPPYNYH HQEDERPHQP  420
RKFDGRSTSG SGLEEVIMGC TSRRSKGGET SGGKDGTEWQ YPSFWPSDSQ DHHG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0037130.0AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641895.10.0PREDICTED: uncharacterized protein LOC9268992 isoform X2
TrEMBLA0A0E0E2V30.0A0A0E0E2V3_9ORYZ; Uncharacterized protein
STRINGLOC_Os06g36480.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-101NAC domain containing protein 75