PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G09660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 87aa    MW: 9746.99 Da    PI: 9.335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G09660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.6e-0815541554
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +iN+ +++L++llP++ + ++   s    L++++ YIksL
  OMERI06G09660.1 15 EINELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSL 54
                     7**************7567777799999***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.055154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-101477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-91469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-51554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSRRSSRSS VSEEEINELI SKLQSLLPSS RRRGANQAST TKLLKETCSY IKSLHREVDD  60
LSDRLSDLMA GMDHNSPGAE IIRSLLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8322841e-143CT832284.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029F08, full insert sequence.
GenBankAK0716011e-143AK071601.1 Oryza sativa Japonica Group cDNA clone:J023102C01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642646.14e-55PREDICTED: transcription factor ILI4
SwissprotA2YAW85e-57ILI4_ORYSI; Transcription factor ILI4
SwissprotQ0DDF65e-57ILI4_ORYSJ; Transcription factor ILI4
TrEMBLA0A0E0HMY44e-55A0A0E0HMY4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0DZC44e-55A0A0E0DZC4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0L9K54e-55A0A0E0L9K5_ORYPU; Uncharacterized protein
TrEMBLI1Q0V04e-55I1Q0V0_ORYGL; Uncharacterized protein
STRINGBGIOSGA022576-PA1e-54(Oryza sativa Indica Group)
STRINGLOC_Os06g12210.11e-54(Oryza sativa Japonica Group)
STRINGORGLA06G0076300.11e-54(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-27bHLH family protein